3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_019 not in the Motif Atlas
Geometric match to IL_5J7L_245
Geometric discrepancy: 0.0801
The information below is about IL_5J7L_245
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_04021.2
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5LZU|1|5|G|415
5LZU|1|5|U|416
5LZU|1|5|G|417
5LZU|1|5|A|418
5LZU|1|5|A|419
5LZU|1|5|A|420
5LZU|1|5|C|421
*
5LZU|1|8|G|13
5LZU|1|8|U|14
5LZU|1|8|G|15
5LZU|1|8|G|16
5LZU|1|8|A|17
5LZU|1|8|U|18
5LZU|1|8|C|19

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain C
uL4
Chain P
uL22
Chain e
eL32

Coloring options:


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