IL_5LZU_026

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

5LZU|1|5|G|483, 5LZU|1|5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_026 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2323

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5LZU|1|5|G|482
5LZU|1|5|G|483
5LZU|1|5|U|484
5LZU|1|5|C|485
*
5LZU|1|5|G|671
5LZU|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28