IL_5LZU_056

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_056 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1002

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5LZU|1|5|C|1551
5LZU|1|5|G|1552
5LZU|1|5|A|1553
5LZU|1|5|A|1554
5LZU|1|5|G|1555
*
5LZU|1|5|U|1572
5LZU|1|5|G|1573
5LZU|1|5|G|1574
5LZU|1|5|A|1575
5LZU|1|5|G|1576

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43