IL_5LZU_070

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGGGCC*GAUCUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_070 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3944

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5LZU|1|5|G|1758
5LZU|1|5|G|1759
5LZU|1|5|G|1760
5LZU|1|5|G|1761
5LZU|1|5|C|1762
5LZU|1|5|C|1763
*
5LZU|1|5|G|1769
5LZU|1|5|A|1770
5LZU|1|5|U|1771
5LZU|1|5|C|1772
5LZU|1|5|U|1773
5LZU|1|5|C|1774

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16