IL_5LZU_075

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_075 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.12

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5LZU|1|5|C|1911
5LZU|1|5|G|1912
5LZU|1|5|C|1913
5LZU|1|5|C|1914
5LZU|1|5|C|1915
5LZU|1|5|G|1916
5LZU|1|5|A|1917
5LZU|1|5|U|1918
*
5LZU|1|5|G|2064
5LZU|1|5|G|2065

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain O

uL13

Chain S

eL20

Chain f

eL33