3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CCUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
5LZU|1|5|U|2305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_086 not in the Motif Atlas
Homologous match to IL_5TBW_059
Geometric discrepancy: 0.1316
The information below is about IL_5TBW_059
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

5LZU|1|5|C|2302
5LZU|1|5|C|2303
5LZU|1|5|U|2304
5LZU|1|5|U|2305
5LZU|1|5|G|2306
5LZU|1|5|A|2307
5LZU|1|5|A|2308
5LZU|1|5|G|2309
*
5LZU|1|5|U|2329
5LZU|1|5|G|2330
5LZU|1|5|G|2331
5LZU|1|5|A|2332
5LZU|1|5|G|2333

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
uL4
Chain Y
uL24
Chain e
eL32

Coloring options:


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