IL_5LZU_113

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_113 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.2915

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5LZU|1|5|G|3710
5LZU|1|5|A|3711
5LZU|1|5|A|3712
5LZU|1|5|U|3713
5LZU|1|5|G|3714
*
5LZU|1|5|C|3739
5LZU|1|5|G|3740
5LZU|1|5|C|3741

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

uL2