3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_134 not in the Motif Atlas
Homologous match to IL_8C3A_114
Geometric discrepancy: 0.0979
The information below is about IL_8C3A_114
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65585.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

5LZU|1|5|C|4412
5LZU|1|5|C|4413
5LZU|1|5|A|4414
5LZU|1|5|A|4415
5LZU|1|5|G|4416
*
5LZU|1|5|C|4426
5LZU|1|5|G|4427
5LZU|1|5|A|4428
5LZU|1|5|C|4429
5LZU|1|5|G|4430

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain I
uL16
Chain ii
Eukaryotic peptide chain release factor subunit 1
Chain m
eL40

Coloring options:


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