IL_5LZU_139

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

5LZU|1|5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_139 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3921

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|U|4468
5LZU|1|5|U|4469
5LZU|1|5|G|4470
*
5LZU|1|5|C|4485
5LZU|1|5|C|4486
5LZU|1|5|A|4487
5LZU|1|5|A|4488
5LZU|1|5|G|4489

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40