IL_5LZU_144

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

5LZU|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_144 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3133

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5LZU|1|5|C|4582
5LZU|1|5|C|4583
5LZU|1|5|A|4584
5LZU|1|5|U|4585
*
5LZU|1|5|A|4717
5LZU|1|5|G|4718
5LZU|1|5|G|4719
5LZU|1|5|C|4720
5LZU|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13