3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CUGAC*GGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_189 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.1994
The information below is about IL_4WFL_001
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_87767.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
16

Unit IDs

5LZU|1|9|C|188
5LZU|1|9|U|189
5LZU|1|9|G|190
5LZU|1|9|A|191
5LZU|1|9|C|192
*
5LZU|1|9|G|207
5LZU|1|9|G|208
5LZU|1|9|A|209
5LZU|1|9|U|210
5LZU|1|9|G|211

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain II
40S ribosomal protein S8

Coloring options:


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