IL_5LZU_195

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5LZU|1|9|U|368, 5LZU|1|9|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_195 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2601

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5LZU|1|9|U|366
5LZU|1|9|U|367
5LZU|1|9|U|368
5LZU|1|9|C|369
5LZU|1|9|G|370
5LZU|1|9|A|371
*
5LZU|1|9|U|393
5LZU|1|9|G|394

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

40S ribosomal protein S8

Chain LL

uS17

Chain R

eL19