3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CU*AAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LZU_213 not in the Motif Atlas
Geometric match to IL_5VCI_005
Geometric discrepancy: 0.264
The information below is about IL_5VCI_005
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_64417.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
18

Unit IDs

5LZU|1|9|C|745
5LZU|1|9|U|749
*
5LZU|1|9|A|794
5LZU|1|9|A|795
5LZU|1|9|G|796

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain EE
40S ribosomal protein S4
Chain LL
uS17

Coloring options:


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