IL_5LZU_221

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5LZU|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_221 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2375

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5LZU|1|9|G|925
5LZU|1|9|A|926
5LZU|1|9|C|927
*
5LZU|1|9|G|1014
5LZU|1|9|U|1015
5LZU|1|9|U|1016
5LZU|1|9|U|1017

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

uS15

Chain bb

40S ribosomal protein S27