IL_5LZU_243

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5LZU|1|9|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZU_243 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.1178

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5LZU|1|9|U|1329
5LZU|1|9|G|1330
5LZU|1|9|C|1331
5LZU|1|9|A|1332
5LZU|1|9|U|1333
*
5LZU|1|9|A|1498
5LZU|1|9|U|1499
5LZU|1|9|G|1500

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain KK

eS10

Chain UU

uS10

Chain dd

uS14

Chain hh

mRNA (UGA stop codon)

Chain ii

Eukaryotic peptide chain release factor subunit 1