IL_5LZV_022

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

5LZV|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_022 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.3489

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5LZV|1|5|C|459
5LZV|1|5|C|460
*
5LZV|1|5|G|695
5LZV|1|5|C|696
5LZV|1|5|G|697

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain r

eL28