IL_5LZV_041

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

5LZV|1|5|C|1214, 5LZV|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_041 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.3237

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5LZV|1|5|C|1082
5LZV|1|5|U|1083
5LZV|1|5|C|1084
*
5LZV|1|5|G|1213
5LZV|1|5|C|1214
5LZV|1|5|C|1215
5LZV|1|5|C|1216
5LZV|1|5|G|1217

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain b

eL29