IL_5LZV_049

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_049 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2512

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

5LZV|1|5|C|1431
5LZV|1|5|G|1432
5LZV|1|5|A|1433
5LZV|1|5|G|1434
*
5LZV|1|5|C|1450
5LZV|1|5|G|1451
5LZV|1|5|A|1452
5LZV|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18