IL_5LZV_186

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_186 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2016

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5LZV|1|9|C|188
5LZV|1|9|U|189
5LZV|1|9|G|190
5LZV|1|9|A|191
5LZV|1|9|C|192
*
5LZV|1|9|G|207
5LZV|1|9|G|208
5LZV|1|9|A|209
5LZV|1|9|U|210
5LZV|1|9|G|211

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

eS8