IL_5LZV_201

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_201 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1686

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5LZV|1|9|G|563
5LZV|1|9|A|564
5LZV|1|9|G|565
*
5LZV|1|9|C|585
5LZV|1|9|G|586
5LZV|1|9|A|587
5LZV|1|9|G|588
5LZV|1|9|G|589
5LZV|1|9|A|590
5LZV|1|9|U|591
5LZV|1|9|C|592

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30