IL_5LZV_217

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZV_217 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.1149

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

5LZV|1|9|A|922
5LZV|1|9|G|923
*
5LZV|1|9|C|1019
5LZV|1|9|A|1020
5LZV|1|9|U|1021
5LZV|1|9|U|1022

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

uS15

Chain WW

uS8

Chain bb

eS27