IL_5LZW_008

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

5LZW|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_008 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.202

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LZW|1|5|C|118
5LZW|1|5|G|119
5LZW|1|5|A|120
5LZW|1|5|A|121
*
5LZW|1|5|U|152
5LZW|1|5|G|153

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain h

uL29