IL_5LZW_111

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

5LZW|1|5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_111 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1106

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5LZW|1|5|C|3700
5LZW|1|5|C|3701
5LZW|1|5|A|3702
5LZW|1|5|G|3703
*
5LZW|1|5|C|3749
5LZW|1|5|G|3750

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

uL2