IL_5LZW_123

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

5LZW|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_123 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1198

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

5LZW|1|5|U|3927
5LZW|1|5|A|3928
5LZW|1|5|G|3929
*
5LZW|1|5|U|4181
5LZW|1|5|G|4182
5LZW|1|5|G|4183
5LZW|1|5|G|4184

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain N

eL15

Chain o

eL42