IL_5LZW_135

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_135 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1012

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5LZW|1|5|C|4412
5LZW|1|5|C|4413
5LZW|1|5|A|4414
5LZW|1|5|A|4415
5LZW|1|5|G|4416
*
5LZW|1|5|C|4426
5LZW|1|5|G|4427
5LZW|1|5|A|4428
5LZW|1|5|C|4429
5LZW|1|5|G|4430

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

uL16

Chain m

eL40