IL_5LZW_199

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

5LZW|1|9|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_199 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.2722

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5LZW|1|9|U|487
5LZW|1|9|U|488
5LZW|1|9|A|489
*
5LZW|1|9|U|511
5LZW|1|9|A|512

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24

Chain jj

Hbs1l