IL_5LZW_222

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5LZW|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_222 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.2403

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5LZW|1|9|G|925
5LZW|1|9|A|926
5LZW|1|9|C|927
*
5LZW|1|9|G|1014
5LZW|1|9|U|1015
5LZW|1|9|U|1016
5LZW|1|9|U|1017

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

uS15

Chain bb

eS27