IL_5LZW_244

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5LZW|1|9|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_244 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.1251

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5LZW|1|9|U|1329
5LZW|1|9|G|1330
5LZW|1|9|C|1331
5LZW|1|9|A|1332
5LZW|1|9|U|1333
*
5LZW|1|9|A|1498
5LZW|1|9|U|1499
5LZW|1|9|G|1500

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain KK

eS10

Chain UU

uS10

Chain dd

uS14

Chain ii

Pelota