IL_5LZW_255

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_255 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.0947

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5LZW|1|9|G|1604
5LZW|1|9|G|1605
5LZW|1|9|G|1606
5LZW|1|9|A|1607
5LZW|1|9|U|1608
5LZW|1|9|C|1609
5LZW|1|9|G|1610
*
5LZW|1|9|C|1629
5LZW|1|9|A|1630
5LZW|1|9|U|1631
5LZW|1|9|G|1632
5LZW|1|9|A|1633
5LZW|1|9|A|1634
5LZW|1|9|C|1635

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain SS

uS13

Chain TT

eS19