IL_5LZW_283

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_283 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2791

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5LZW|1|9|C|927
5LZW|1|9|G|928
5LZW|1|9|G|929
5LZW|1|9|C|930
5LZW|1|9|C|931
*
5LZW|1|9|G|1010
5LZW|1|9|A|1011
5LZW|1|9|A|1012
5LZW|1|9|U|1013
5LZW|1|9|G|1014

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain bb

eS27