IL_5LZW_287

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

ACAG*CUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZW_287 not in the Motif Atlas

Geometric match to IL_9DFE_030

Geometric discrepancy: 0.3941

The information below is about IL_9DFE_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5LZW|1|9|A|1291
5LZW|1|9|C|1292
5LZW|1|9|A|1293
5LZW|1|9|G|1294
*
5LZW|1|9|C|1305
5LZW|1|9|U|1306
5LZW|1|9|U|1307

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31