IL_5LZX_008

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

5LZX|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_008 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.1975

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5LZX|1|5|C|118
5LZX|1|5|G|119
5LZX|1|5|A|120
5LZX|1|5|A|121
*
5LZX|1|5|U|152
5LZX|1|5|G|153

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

eL8

Chain N

Ribosomal protein L15

Chain h

uL29