IL_5LZX_043

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

5LZX|1|5|C|1214, 5LZX|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_043 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.3046

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5LZX|1|5|C|1082
5LZX|1|5|U|1083
5LZX|1|5|C|1084
*
5LZX|1|5|G|1213
5LZX|1|5|C|1214
5LZX|1|5|C|1215
5LZX|1|5|C|1216
5LZX|1|5|G|1217

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain b

eL29