IL_5LZX_083

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

5LZX|1|5|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_083 not in the Motif Atlas

Geometric match to IL_5TBW_032

Geometric discrepancy: 0.2498

The information below is about IL_5TBW_032

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5LZX|1|5|C|2083
5LZX|1|5|U|2084
5LZX|1|5|G|2085
*
5LZX|1|5|C|2272
5LZX|1|5|G|2273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18

Chain e

eL32