IL_5LZX_180

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_180 not in the Motif Atlas

Geometric match to IL_4TS2_004

Geometric discrepancy: 0.1659

The information below is about IL_4TS2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5LZX|1|9|G|108
5LZX|1|9|U|109
5LZX|1|9|U|110
*
5LZX|1|9|G|351
5LZX|1|9|U|352
5LZX|1|9|C|353

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17