IL_5LZX_237

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_237 not in the Motif Atlas

Homologous match to IL_4V88_446

Geometric discrepancy: 0.1777

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5LZX|1|9|G|1270
5LZX|1|9|C|1271
5LZX|1|9|C|1272
*
5LZX|1|9|G|1510
5LZX|1|9|U|1511
5LZX|1|9|C|1512

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31