IL_5LZX_284

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_284 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2559

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5LZX|1|9|G|692
5LZX|1|9|A|693
5LZX|1|9|G|694
5LZX|1|9|C|695
*
5LZX|1|9|G|731
5LZX|1|9|U|732
5LZX|1|9|C|733
5LZX|1|9|C|734

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

eS7

Chain WW

uS8