IL_5LZX_288

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GA*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZX_288 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3192

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

5LZX|1|9|G|1290
5LZX|1|9|A|1291
*
5LZX|1|9|U|1307
5LZX|1|9|U|1308
5LZX|1|9|C|1309

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain MM

40S ribosomal protein S12

Chain dd

uS14

Chain ff

eS31