IL_5LZZ_025

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGCG*CCG

Length

7 nucleotides

Bulged bases

5LZZ|1|5|G|481, 5LZZ|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_025 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.223

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5LZZ|1|5|C|480
5LZZ|1|5|G|481
5LZZ|1|5|C|481|||A
5LZZ|1|5|G|482
*
5LZZ|1|5|C|672
5LZZ|1|5|C|673
5LZZ|1|5|G|674

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28