IL_5LZZ_030

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

5LZZ|1|5|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_030 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.254

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

5LZZ|1|5|G|508
5LZZ|1|5|A|509
5LZZ|1|5|U|510
*
5LZZ|1|5|A|649
5LZZ|1|5|C|650

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

eL13

Chain a

uL15