IL_5LZZ_034

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

5LZZ|1|5|G|729, 5LZZ|1|5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_034 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0881

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

5LZZ|1|5|C|727
5LZZ|1|5|U|728
5LZZ|1|5|G|729
5LZZ|1|5|G|730
5LZZ|1|5|G|731
*
5LZZ|1|5|C|938
5LZZ|1|5|G|939

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain M

eL14

Chain S

eL20