IL_5LZZ_081

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5LZZ|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_081 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1897

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5LZZ|1|5|G|2001
5LZZ|1|5|A|2002
5LZZ|1|5|G|2003
5LZZ|1|5|U|2004
5LZZ|1|5|G|2005
*
5LZZ|1|5|C|2014
5LZZ|1|5|U|2015
5LZZ|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain s

uL10

Chain t

uL11