IL_5LZZ_088

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

5LZZ|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_088 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.1825

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5LZZ|1|5|U|2415
5LZZ|1|5|G|2416
5LZZ|1|5|A|2417
5LZZ|1|5|A|2418
5LZZ|1|5|C|2419
*
5LZZ|1|5|G|2427
5LZZ|1|5|A|2428
5LZZ|1|5|A|2429

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39