IL_5LZZ_217

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_217 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1102

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

5LZZ|1|9|A|922
5LZZ|1|9|G|923
*
5LZZ|1|9|C|1019
5LZZ|1|9|A|1020
5LZZ|1|9|U|1021
5LZZ|1|9|U|1022

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

uS15

Chain WW

uS8

Chain bb

40S ribosomal protein S27