IL_5LZZ_282

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LZZ_282 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2546

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5LZZ|1|9|G|692
5LZZ|1|9|A|693
5LZZ|1|9|G|694
5LZZ|1|9|C|695
*
5LZZ|1|9|G|731
5LZZ|1|9|U|732
5LZZ|1|9|C|733
5LZZ|1|9|C|734

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain HH

eS7

Chain WW

uS8