IL_5MDV_053

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UGU*AACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDV_053 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.3411

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5MDV|1|1|U|1409
5MDV|1|1|G|1410
5MDV|1|1|U|1411
*
5MDV|1|1|A|1590
5MDV|1|1|A|1591
5MDV|1|1|C|1592
5MDV|1|1|A|1593

Current chains

Chain 1

23S ribosomal RNA

Nearby chains