IL_5MDV_069

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5MDV|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDV_069 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0564

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5MDV|1|1|C|1686
5MDV|1|1|G|1687
5MDV|1|1|U|1688
5MDV|1|1|A|1689
5MDV|1|1|A|1690
5MDV|1|1|C|1691
*
5MDV|1|1|G|1696
5MDV|1|1|G|1697
5MDV|1|1|A|1698
5MDV|1|1|G|1699
5MDV|1|1|A|1700
5MDV|1|1|A|1701
5MDV|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2