IL_5MDV_091

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGGAG*CGACCUUGAAAUACC

Length

20 nucleotides

Bulged bases

5MDV|1|1|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MDV|1|1|G|2123
5MDV|1|1|G|2124
5MDV|1|1|G|2125
5MDV|1|1|A|2126
5MDV|1|1|G|2127
*
5MDV|1|1|C|2161
5MDV|1|1|G|2162
5MDV|1|1|A|2163
5MDV|1|1|C|2164
5MDV|1|1|C|2165
5MDV|1|1|U|2166
5MDV|1|1|U|2167
5MDV|1|1|G|2168
5MDV|1|1|A|2169
5MDV|1|1|A|2170
5MDV|1|1|A|2171
5MDV|1|1|U|2172
5MDV|1|1|A|2173
5MDV|1|1|C|2174
5MDV|1|1|C|2175

Current chains

Chain 1

23S ribosomal RNA

Nearby chains