IL_5MDV_116

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

5MDV|1|2|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDV_116 not in the Motif Atlas

Homologous match to IL_4LFB_001

Geometric discrepancy: 0.1314

The information below is about IL_4LFB_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

5MDV|1|2|U|30
5MDV|1|2|G|31
5MDV|1|2|A|32
*
5MDV|1|2|U|552
5MDV|1|2|A|553

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12