IL_5MDV_139

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5MDV_139 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0502

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5MDV|1|2|C|504
5MDV|1|2|G|505
5MDV|1|2|G|506
5MDV|1|2|C|507
5MDV|1|2|U|508
5MDV|1|2|A|509
5MDV|1|2|A|510
5MDV|1|2|C|511
*
5MDV|1|2|G|540
5MDV|1|2|G|541

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Alternative ribosome-rescue factor A

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12